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Commits on Mar 3, 2014

• speedup loading for unit tests via --test-mode. Also provide --skip-gene-tables

  

  arq5x

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Commits on Jan 21, 2014

• update unit tests for stats tool

  

  udp3f

  committed
  1491355

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• make naming consistent

  

  udp3f

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Commits on Jan 20, 2014

• unit test for gene tables, loading with multiple cores

  

  udp3f

  committed
  21b0c57

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• load with multiple cores: test gene table

  

  udp3f

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Commits on Jan 18, 2014

• unit test for lof-sieve

  

  udp3f

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Commits on Jan 17, 2014

• unit tests for gene tables

  

  udp3f

  committed
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Commits on Jan 16, 2014

• unit test update for new additions to variant table:fix q10-12

  

  udp3f

  committed
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• updated unit tests for clinvar

  

  udp3f

  committed
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Commits on Jan 2, 2014

• [TST] unit test for columns containing gt substring

  

  arq5x

  committed
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Commits on Dec 10, 2013

• [BUG] --gt-filter was not being enforced from query tool unless a GT* column was selected.

  

  arq5x

  committed
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Commits on Nov 14, 2013

• test vcf and ped files added for comp_het unit testing

  

  Uma Paila

  committed
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• unit testing script for comp_hets tool

  

  Uma Paila

  committed
  2f3ec61

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• unit testing for comp_hets tool

  

  Uma Paila

  committed
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Commits on Nov 7, 2013

• Added --show-families option to query output.

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  roryk

  committed
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Commits on Oct 30, 2013

• Fix new unit tests.

  roryk

  committed
  c5c8245

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• Bug fixes for JSON output, the unit test for amend

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  roryk

  committed
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• Added gemini amend to edit an existing database.

  roryk

  committed
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Commits on Oct 25, 2013

• Added --carrier-summary-by-phenotype.

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  roryk

  committed
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Commits on Oct 11, 2013

• Added --passonly flag to gemini load.

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  roryk

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Commits on Oct 10, 2013

• add missing test files

  

  arq5x

  committed
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Commits on Oct 6, 2013

• add missing test files

  

  arq5x

  committed
  cc9e6b2

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• resolve conflicts

  

  arq5x

  committed
  592d61b

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• tweaks to auto_rec functionality for unaffected children

  

  arq5x

  committed
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• [ENH] auto_* tools work without parents

  

  arq5x

  committed
  ae7cf78

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Commits on Oct 4, 2013

• Fixed variant_samples etc all showing up when not requested.

  roryk

  committed
  49c231a

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Commits on Oct 1, 2013

• Extended PED format added.

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  roryk

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Commits on Sep 30, 2013

• Switched family-query test to use the --min-kindreds option.

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  roryk

  committed
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• --sample-filter added.

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  roryk

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Commits on Sep 26, 2013

• Merge branch 'master' of github.com:arq5x/gemini

  roryk

  committed
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• Added family wise stratification of queries.

  roryk

  committed
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Commits on Sep 24, 2013

• [TST] update tests for new vcf_id column

  

  arq5x

  committed
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Commits on Sep 23, 2013

• Added --region to gemini query.

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  roryk

  committed
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• Add phenotype tests to test-query.

  roryk

  committed
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Commits on Sep 19, 2013

• Merge branch 'query-refactor'

  roryk

  committed
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