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panel resource for Whole Exome Sequencing data

Status: Open.

#293 In nf-core/oncoanalyser;

· ahwanpandey opened on Jun 11, 2026

virusbreaken: Exception in thread "main" htsjdk.samtools.SAMException: Missing Quality Line at line 2609 in fastq /dev/fd/63

bugSomething isn't workingSomething isn't working

Status: Open.

#292 In nf-core/oncoanalyser;

· YingYa opened on Jun 7, 2026

Test profile fails at purple module

bugSomething isn't workingSomething isn't working

Status: Open.

#291 In nf-core/oncoanalyser;

· mariesieger opened on Jun 1, 2026

Publish fastp reports and log files

enhancementNew feature or requestNew feature or request

Status: Open.

#290 In nf-core/oncoanalyser;

· racng opened on May 27, 2026

Variants flagged as PONArtefact despite absence from gnomAD and SAGE PON

Status: Open.

#289 In nf-core/oncoanalyser;

· silkrp opened on May 25, 2026

Workflow fails intermittently due to UnknownHostException from s3://ngi-igenomes/igenomes/

bugSomething isn't workingSomething isn't working

Status: Open.

#288 In nf-core/oncoanalyser;

· oneillkza opened on May 19, 2026

Add support for realigning from bam/cram input

enhancementNew feature or requestNew feature or request

Status: Open.

#287 In nf-core/oncoanalyser;

· oneillkza opened on May 14, 2026

Duelling resource requirements of esvee and bwa_mem

enhancementNew feature or requestNew feature or request

Status: Open.

#283 In nf-core/oncoanalyser;

· oneillkza opened on Apr 7, 2026

Please document gnomad and clinvar annotation versions

enhancementNew feature or requestNew feature or request

Status: Open.

#282 In nf-core/oncoanalyser;

· oneillkza opened on Apr 2, 2026

Add support for RNA CRAM input

enhancementNew feature or requestNew feature or request

Status: Open.

#279 In nf-core/oncoanalyser;

· oneillkza opened on Mar 23, 2026

Improve handling of metadata and multiple samples

enhancementNew feature or requestNew feature or request

Status: Open.

#275 In nf-core/oncoanalyser;

· scwatts opened on Feb 5, 2026

Patient with 2 donors

enhancementNew feature or requestNew feature or request

Status: Open.

#274 In nf-core/oncoanalyser;

· mwe-bixeng opened on Feb 5, 2026