Search results

Investigate reducing base container size for wave provisioned containers.

infrastructure

Status: Open.

Enhancement

#4315 In nf-core/tools;

· awgymer opened on Jun 5, 2026

Check for dead links in the template during linting

enhancement

Status: Open.

Enhancement

#4308 In nf-core/tools;

· Aratz opened on May 28, 2026

User-selected branch used for upstream repo when updating modules from a forked subworkflow remote

bugSomething isn't workingSomething isn't working

Status: Open.

#4296 In nf-core/tools;

· ScottNortonPhD opened on May 23, 2026

Add option to disable creating container configs

enhancement

Status: Open.

#4295 In nf-core/tools;

· ScottNortonPhD opened on May 23, 2026

stack trace using nf-core modules test

bugSomething isn't workingSomething isn't working

Status: Open.

#4273 In nf-core/tools;

· mahesh-panchal opened on May 8, 2026

Handle deprecated and deleted modules/subworkflows gracefully

enhancement

Status: Open.

#4260 In nf-core/tools;

· SPPearce opened on May 5, 2026

·  

4.1.0

meta.json stub file trips up meta_nf_meta_key linting

bugSomething isn't workingSomething isn't working

Status: Open.

#4250 In nf-core/tools;

· DLBPointon opened on Apr 29, 2026

·  

4.1.0

module linting should ensure that the modules are either tool or tool/subtool

enhancement

Status: Open.

#4235 In nf-core/tools;

· famosab opened on Apr 28, 2026

stub .gz linting is too restrictive

bugSomething isn't workingSomething isn't working

good-first-issue

Status: Open.

#4231 In nf-core/tools;

· famosab opened on Apr 28, 2026

Fetch pipeline config in JSON

enhancement

Status: Open.

#4204 In nf-core/tools;

· muffato opened on Apr 20, 2026

Patch file is removed when previewing an update diff

bugSomething isn't workingSomething isn't working

Status: Open.

#4183 In nf-core/tools;

· CormacKinsella opened on Apr 10, 2026

modules.json - inconsistent formatting across functions

bugSomething isn't workingSomething isn't working

Status: Open.

#4177 In nf-core/tools;

· CormacKinsella opened on Apr 7, 2026