raising timeout limit to account for datetime[ns] dtyping

Creating rank thresholds at pipeline execution time

Merge branch 'master' of github.com:nhoffman/ya16sdb

pulling correct deenurp version tag

0.8.0 release

0.7.3 release deduplicating records by wgs locus_tag

0.7.2 release

0.7.1 release

ANI annotations, dependency updates and pipeline cleanup (#43)

* renaming this to download.py

* Handles accession2taxid now instead of global list of ncbi accessions

* Re-structuring pipeline for clarity

* bin/ya16sdb.py holds some common code

* Remove sequences with unknown tax_ids after looking for features

* adding an easier to manage cache folder

* Fixing set difference logic

* removing feather-format and locking in dependency versions

* moving SEQ_INFO_COLS into ya16sdb.py script

* Correctly appending previous records to records cache

* Adding ANI tax check annotations

* 0.8 update notes

* Not needed anymore

* Explicit merge(on="...") for clarity and some additional comments

* need biopython and bumping sqlalchemy version

* Using headers in ani and asm files (inspired from dhoogest wgs extraction code) and prioritizing assembly_genbank accessions found in asm file

* 0.7 release