Stars
Database and pipeline for phylogenetic determination of AMF from environmental sequences
Versatile open-source tool for microbiome analysis
an open-sourced pipeline, which offers an intuitive graphical interface allowing users to conduct reliable HTS read analysis that yields datasets ready for statistical analysis.
A python package that takes XCT images of porous materials and generates representative digital twin micromodels
Tame the firehose of scientific publications in your field
This is the website for the synthesis working group on Above-Belowground Coupling and Synchrony focused on plant and soil microbial communities across different spatial and temporal scales
Interface to the Global Biodiversity Information Facility API
An analysis and visualization platform for 'omics data
Self-paced tutorials that review key data literacy concepts and data analysis skills. Published materials can be found at:
Automatically enhancing the ecoevojobs.net spreadsheet with additional data
Partner specificity and association networks in ectomycorrhizal symbiosis
A tool to find sequencing data and metadata from public databases.
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
R package for the (plant) Taxonomic Name Resolution Service
Autonomous coding agent as an SDK, IDE extension, or CLI assistant.
Efficient phylogenetic tree inference for massive taxonomic datasets
Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …
Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
Processing NEON soil microbe marker gene sequence data into ASV tables.
Mycorrhizal phenology study at The Morton Arboretum in Illinois, USA.
A dataset design pattern and R package for ecological community data.
A whole-genome reference database of soil bacteria, fungi, and archaea