Fixed

• Fixed the --yaml / --sequence execution path when invoking Boltz prediction.
• Added offline MSA handling for YAML inputs.
• Improved external tool resolution from the active Python environment.
• Normalized docked ligand residue names before Boltzina scoring.
• Avoided recursive fallback during affinity scoring failures.

Full Changelog: v1.0.0...v1.0.1

What's Changed

• refactor: v0.2 overhaul — UniDock2 backend, multi-chain input, modular rewrite by @YumizSui in #11
• chore: PyPI packaging — classifiers, MANIFEST.in, CHANGELOG, single-s… by @YumizSui in #12

New Contributors

• @YumizSui made their first contribution in #11

Full Changelog: https://github.com/ohuelab/boltzina/commits/v1.0.0