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@ga4gh Global Alliance for Genomics and Health

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    171 repositories

    • vrs-python

      Public
      GA4GH Variation Representation Python Implementation
      bioinformaticsgenomicsga4gh
      bioinformaticsgenomicsga4gh
      Python
      •
      Apache License 2.0
      •43•63•68•9•Updated Sep 24, 2026Sep 24, 2026

    • va-spec

      Public
      An information model for representing variant annotations.
      Jupyter Notebook
      •
      Apache License 2.0
      •7•28•120•2•Updated Sep 24, 2026Sep 24, 2026

    • task-execution-schemas

      Public
      Apache License 2.0
      •32•96•45•7•Updated Sep 24, 2026Sep 24, 2026

    • gkm-starter-kit

      Public
      A single community-facing entry point that helps someone understand and adopt GKS in practice.
      Python
      •
      Creative Commons Zero v1.0 Universal
      •1•2•2•1•Updated Sep 24, 2026Sep 24, 2026

    • ga4gh-sdk

      Public
      Generic SDK and CLI for GA4GH API services
      Rust
      •
      Apache License 2.0
      •6•15•33•0•Updated Sep 24, 2026Sep 24, 2026

    • ga4gh-reference-cloud-helm

      Public
      Helm chart for the GA4GH Reference Cloud
      0•0•0•0•Updated Sep 23, 2026Sep 23, 2026

    • ga4gh-agentic-harness-mcp

      Public
      Universal MCP server for GA4GH services and the GA4GH Implementation Registry (DRS/TRS/WES + generic service-info), with pluggable auth and dual stdio/HTTP tran…
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Sep 23, 2026Sep 23, 2026

    • ga4gh-agentic-harness-profile

      Public
      GA4GH Agentic Harness Profile: protocol-neutral operations, schemas, bindings, and conformance materials
      Python
      •
      Apache License 2.0
      •1•0•0•1•Updated Sep 23, 2026Sep 23, 2026

    • ga4gh-agentic-harness-python

      Public
      Python reference implementation of the GA4GH Agentic Harness Profile
      Python
      •1•0•0•1•Updated Sep 23, 2026Sep 23, 2026

    • tool-registry-service-schemas

      Public
      APIs for discovering genomics tools, their metadata and their containers
      apiworkflowtool
      apiworkflowtoolwdlga4ghcwl
      Shell
      •
      Apache License 2.0
      •18•35•27•0•Updated Sep 23, 2026Sep 23, 2026

    • refcloud-ui

      Public
      TypeScript
      •0•0•0•15•Updated Sep 22, 2026Sep 22, 2026

    • analytics-dashboard-ui

      Public
      The UI for the embedded analytics dashboard on GA4GH metrics
      Python
      •
      Apache License 2.0
      •0•0•4•1•Updated Sep 22, 2026Sep 22, 2026

    • gkm-core

      Public
      Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)
      Python
      •
      Apache License 2.0
      •0•3•9•2•Updated Sep 21, 2026Sep 21, 2026

    • GA4GH-RegBot

      Public
      Python
      •
      MIT License
      •10•6•0•10•Updated Sep 21, 2026Sep 21, 2026

    • quality-control-wgs

      Public
      GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations
      Jupyter Notebook
      •
      Apache License 2.0
      •7•26•4•3•Updated Sep 20, 2026Sep 20, 2026

    • va-spec-python

      Public
      GA4GH Variation Annotation Python Implementation
      bioinformaticsgenomicsga4gh
      bioinformaticsgenomicsga4gh
      Python
      •
      Apache License 2.0
      •1•2•4•0•Updated Sep 18, 2026Sep 18, 2026

    • cat-vrs

      Public
      A terminology and data model for describing categorical variation concepts.
      Makefile
      •
      Apache License 2.0
      •7•9•34•2•Updated Sep 18, 2026Sep 18, 2026

    • vrs

      Public
      Extensible specification for representing and uniquely identifying biological sequence variation
      bioinformaticsgenomicsvariation
      bioinformaticsgenomicsvariation
      Jupyter Notebook
      •
      Apache License 2.0
      •43•98•35•1•Updated Sep 18, 2026Sep 18, 2026

    • w3id.org

      Public
      Forwarding links and rewrite rules for w3id.org
      HTML
      •2k•3•0•1•Updated Sep 18, 2026Sep 18, 2026

    • gkm-metaschema

      Public
      Tools and scripts for parsing the GKS standards metaschemas
      Python
      •
      Apache License 2.0
      •1•0•15•9•Updated Sep 17, 2026Sep 17, 2026

    • ga4gh-service-info

      Public
      GA4GH service-info specification.
      Apache License 2.0
      •9•9•16•3•Updated Sep 16, 2026Sep 16, 2026

    • data-security

      Public
      This is the repository for the GA4GH Data Security Work Stream, containing AAI and DSIP.
      data-securityworkstream
      data-securityworkstream
      Python
      •16•25•13•4•Updated Sep 14, 2026Sep 14, 2026

    • ga4gh_workflow_clinic_gsoc_2026

      Public
      GA4GH Workflow Clinic
      snakemakenextflowworkflows
      snakemakenextflowworkflows
      Python
      •
      Apache License 2.0
      •1•1•3•3•Updated Sep 14, 2026Sep 14, 2026

    • data-repository-service-schemas

      Public
      A repository for the schemas used for the Data Repository Service.
      Apache License 2.0
      •56•64•74•27•Updated Sep 12, 2026Sep 12, 2026

    • analytics-dashboard-api

      Public
      Embedded analytics dashboard on GA4GH metrics
      Jupyter Notebook
      •0•4•6•9•Updated Sep 8, 2026Sep 8, 2026

    • passport-playground-compute

      Public
      research environment for GA4GH Passport Playground
      ga4gh-passporttrusted-research-environment
      ga4gh-passporttrusted-research-environment
      JavaScript
      •0•0•0•6•Updated Sep 7, 2026Sep 7, 2026

    • phenopacket-schema

      Public
      Repository for the GA4GH phenopacket schema
      schemaprotobufga4gh
      schemaprotobufga4ghphenotypesmonarchinitiativephenopacketsehr-phenotyping
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •34•101•61•11•Updated Sep 1, 2026Sep 1, 2026

    • cat-vrs-python

      Public
      GA4GH Categorical Variation Representation Python Implementation
      bioinformaticsgenomicsga4gh
      bioinformaticsgenomicsga4gh
      Python
      •
      Apache License 2.0
      •5•2•3•0•Updated Sep 1, 2026Sep 1, 2026

    • pdap-reviews

      Public
      Reviews collated from reviewing groups for PDAP
      0•0•0•0•Updated Aug 28, 2026Aug 28, 2026

    • TASC

      Public
      TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used together conveniently.
      interoperabilityharmonisationtechnical-alignment
      interoperabilityharmonisationtechnical-alignment
      9•12•29•6•Updated Aug 28, 2026Aug 28, 2026
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