Starred repositories
Course Material for NYUGSoM Bioinformatics Course
DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets
Popular algorithms explained in simple language with examples and links to their implementation in various programming languages and other required resources.
links to conference publications in graph-based deep learning
Gene orthologs for model organisms in a tidy data format
COVID19 profiling of lung tissue with imaging mass cytometry (IMC)
machine learning and deep learning tutorials, articles and other resources
An open source project which provides privacy-preserving contact tracing for communities using QR codes
Compare number of women, men, and nonbinary people among my friends and followers.
Unbiased single-cell transcriptomic data cell type identification
Statistical Rethinking course at MPI-EVA from Dec 2018 through Feb 2019
Talk on code smells and feels and how to change that via refactoring
R package for color themes inspired by national parks
Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜
Data/analysis repository for "Interrogation of human hematopoiesis..." paper
An open-source application for biological image analysis
Python best practices guidebook, written for humans.
Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge
Python Data Science Handbook: full text in Jupyter Notebooks
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
A place to collect papers that are related to deep learning and computational biology
Light your way in Deep Learning with Torch 🔦
A collection of scripts and notes related to genomics and bioinformatics
my notes for scATACseq analysis