Lists (24)
aligners
2 repositories
assembly
11 repositories
binning
metagenomic binning methods and pipelines17 repositories
bsky_bots
bluesky bots1 repository
circles
software for making circular genome plots1 repository
CRISPRs
software for the identification and visualization of CRISPRs8 repositories
evolution
2 repositories
gsea
1 repository
Hi-C
processing and viz for Hi-C data1 repository
interaction_modeling
7 repositories
julia
julia libraries1 repository
multiomics
3 repositories
networks
5 repositories
nuc_clustering
nucleotide sequence clustering software5 repositories
package_management
for the creation and maintenance of R packages1 repository
phage
tools for phage identification and annotation43 repositories
pipelines
5 repositories
popgen
1 repository
promoters
1 repository
recombination
4 repositories
rna_structure
5 repositories
serotyping
in silico serotype prediction1 repository
trees
3 repositories
web_scraping
1 repository
Starred repositories
GraftM - Rapid community profiles from metagenomes
CNV detection for prokaryote genomes using NGS sequencing data
An ensemble structural variant calling pipeline driven by snakemake using multiple SV and CNV callers.
bwa-mem2 / mm2-fast
Forked from lh3/minimap2A versatile pairwise aligner for genomic and spliced nucleotide sequences
Development repository for the Bioconductor package 'mixOmics '
wrangling and model-free analysis of microbial growth curve data in R with gcplyr
Synteny-enhanced annotation of Bacteriophage genes
Catalog of genomic indexes freely available from public clouds
A tool for generating consensus long-read assemblies for bacterial genomes
A tool for generating consensus long-read assemblies for bacterial genomes
A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
De novo Extraction of Strains from MetAgeNomes
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.
Collection of common utilities too small to get their own repository
Official repository for the Boltz biomolecular interaction models