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Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.

Python 19 4 Updated Nov 30, 2017

MACS -- Model-based Analysis of ChIP-Seq

Python 776 274 Updated May 6, 2026

CUT&RUN and CUT&Tag data processing and analysis

Shell 114 61 Updated Mar 4, 2025

A repository for hosting links and resources presented during the Deep Learning Group meetings (Fall 2021).

10 3 Updated Dec 7, 2021

Python3 command-line and GUI tools for common codon usage statistics given a FASTA of Coding sequences

Python 13 1 Updated Dec 9, 2025

A fast lossless FASTQ compressor with ultra-high compression ratio

C 152 23 Updated May 28, 2025

A library of free open source icons for science illustrations in biology and chemistry

Vue 1,678 96 Updated Jun 15, 2026

😠 Jupyter Widget bindings for UpSet.js for rendering UpSet plots, Euler, and Venn Diagrams

Python 14 1 Updated Jan 17, 2026

Streamlit — A faster way to build and share data apps.

Python 44,978 4,278 Updated Jun 15, 2026

A high-level plotting API for pandas, dask, xarray, and networkx built on HoloViews

Python 1,352 119 Updated Jun 15, 2026

Monitor open source projects activity

PHP 342 27 Updated Nov 19, 2019

A distributed task scheduler for Dask

Python 1,671 761 Updated Jun 11, 2026

Python library for using dplyr like syntax with pandas and SQL

Python 1,183 55 Updated Sep 24, 2025

IPython extensions

JavaScript 63 6 Updated Oct 26, 2015

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

Python 9,904 2,640 Updated Apr 9, 2026

Extract data from a wide range of Internet sources into a pandas DataFrame.

Python 3,217 692 Updated Apr 3, 2025

Carpentries Commons is a place for open sharing of reusable material, such as text for grants, or for job or tenure applications, slide decks for conferences, workshop descriptions, promotional cop…

31 13 Updated Aug 7, 2025

Home Office Digital repository of posters covering different topics - research, access needs, accessibility, design.

2,922 309 Updated May 30, 2025

Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

Python 249 43 Updated Jun 9, 2026

Differential ATAC-seq toolkit

Python 29 7 Updated Dec 21, 2023

Move and resize windows on macOS with keyboard shortcuts and snap areas

Swift 29,245 947 Updated Jun 10, 2026

bedtools - the swiss army knife for genome arithmetic

C 1,038 294 Updated Jun 10, 2026

Scripts to download genomes from the NCBI FTP servers

Python 1,080 178 Updated Apr 7, 2026

Customizable workflows based on snakemake and python for the analysis of NGS data

Python 406 91 Updated Jun 3, 2026

pipreqs - Generate pip requirements.txt file based on imports of any project. Looking for maintainers to move this project forward.

Python 7,455 416 Updated Mar 30, 2026

Detecting sites of genomic enrichment

C 201 31 Updated May 8, 2023

Modular & interactive analysis components for bioinformatics

R 18 4 Updated Dec 9, 2025
Jupyter Notebook 1 Updated May 5, 2020
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