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masknmf-toolbox Public
Tools for motion correcting, compressing, demixing and visualizing single cell functional imaging data
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ibl_mesoscope_sandbox Public
Sandbox for visualization code specifically for the mesoscope project
Jupyter Notebook GNU General Public License v3.0 UpdatedJun 19, 2026 -
OASIS Public
Forked from j-friedrich/OASISDeconvolution of calcium imaging data
Cython GNU General Public License v3.0 UpdatedJun 3, 2026 -
ibllib Public
Forked from int-brain-lab/ibllibIBL core shared libraries
Python MIT License UpdatedMay 11, 2026 -
ROICaT Public
Forked from RichieHakim/ROICaTRegion Of Interest Classification and Tracking
Python GNU General Public License v3.0 UpdatedMay 10, 2026 -
RoMa Public
Forked from RichieHakim/RoMa[CVPR 2024] RoMa: Robust Dense Feature Matching; RoMa is the robust dense feature matcher capable of estimating pixel-dense warps and reliable certainties for almost any image pair.
Python MIT License UpdatedMay 10, 2026 -
pylinalg Public
Forked from pygfx/pylinalgLinear algebra utilities for Python
Python MIT License UpdatedApr 15, 2026 -
wgpu-compute-shaders-sandbox Public
learning compute shaders to see if we can eventually implement standard matrix decompositions in wgsl
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedJul 14, 2025 -
fastplotlib Public
Forked from fastplotlib/fastplotlibNext-gen fast plotting library running on WGPU using the pygfx rendering engine
Python Apache License 2.0 UpdatedJul 6, 2025 -
iblscripts Public
Forked from int-brain-lab/iblscriptsDeployment scripts for ibl
Jupyter Notebook MIT License UpdatedMay 2, 2025 -
localmd Public
Accelerated local matrix decomposition for calcium imaging data
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rlocalnmf Public
New localNMF implementation with advanced background models and initialization options
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jnormcorre Public
Jax implementation of normcorre
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eks Public
Forked from paninski-lab/eksEnsembling and kalman smoothing for pose estimation
Python MIT License UpdatedJun 22, 2024 -
masknmf_full_pipeline Public
End to end pipeline for maskNMF, from motion correction to demixing
Jupyter Notebook MIT License UpdatedSep 15, 2023 -
neurocaas Public
Forked from cunningham-lab/neurocaasIaC codebase for the NeuroCAAS Platform
Python GNU General Public License v3.0 UpdatedSep 6, 2023 -
napari-masknmf Public
napari plugin for viewing and analyzing neuroimaging data (calcium, voltage, etc.)
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masknmf Public
Method for separating overlapping calcium imaging signals
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pytorch_sparse Public
Forked from rusty1s/pytorch_sparsePyTorch Extension Library of Optimized Autograd Sparse Matrix Operations
Python MIT License UpdatedSep 22, 2022 -
neurocaas_contrib Public template
Forked from cunningham-lab/neurocaas_contribRepo to help develop on AMIs associated with NeuroCAAS
Python UpdatedJul 23, 2021 -
funimag Public
Forked from paninski-lab/funimagCompression, denoising and demixing of functional imaging recordings
Python MIT License UpdatedSep 4, 2019 -
noise2self Public
Forked from czbiohub-sf/noise2selfA framework for blind denoising with self-supervision.
Jupyter Notebook MIT License UpdatedAug 1, 2019 -
LocalAggregation Public
Forked from neuroailab/LocalAggregationTensorflow implementation for "Local Aggregation for Unsupervised Learning of Visual Embeddings"
Python UpdatedJul 5, 2019 -
ffn Public
Forked from google/ffnFlood-Filling Networks for instance segmentation in 3d volumes.
Python Apache License 2.0 UpdatedJul 17, 2018 -
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CNMF_E Public
Forked from zhoupc/CNMF_EConstrained Nonnegative Matrix Factorization for microEndoscopic data
MATLAB GNU General Public License v3.0 UpdatedMay 16, 2018
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