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marasmius-methylation Public
Genome methylation analysis of Marasmius Oreades in different tissues
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basidiomycetes_germline Public
Germline sequestration in a basidiomycete fungus
HTML UpdatedApr 7, 2025 -
workshop-RNAseq Public
Forked from NBISweden/workshop-RNAseqWorkshop • Analysis of RNA-seq data
CSS GNU General Public License v3.0 UpdatedMar 15, 2024 -
NeurosporaMethylation Public
Project to analyse methylation pattern in Neurospora
HTML GNU General Public License v3.0 UpdatedOct 12, 2023 -
Applied_Bioinformatics_2021 Public
Forked from vivinglis/Applied_Bioinformatics_2021Repository for code generated during the group project for the course Applied Bioinformatics at Uppsala University, autumn 2021.
R UpdatedJan 9, 2022 -
deNovoValidation Public
Validating deNova assembled transcripts for chimeric transcripts
HTML UpdatedOct 29, 2021 -
dMelanogaster_UCSCtracks Public
Forked from MannervikLab/dMelanogaster_UCSCtracksUpdatedMay 11, 2021 -
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Applied_Bioinformatics_Group_4 Public
Forked from Cam-eraaa/Applied_Bioinformatics_Group_4HTML UpdatedNov 25, 2020 -
Ing-Simmons_et_al_dorsoventral_3D_genome Public
Forked from vaquerizaslab/Ing-Simmons_et_al_dorsoventral_3D_genomePython MIT License UpdatedNov 18, 2020 -
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SCENICprotocol Public
Forked from aertslab/SCENICprotocolA scalable SCENIC workflow for single-cell gene regulatory network analysis
Python GNU General Public License v3.0 UpdatedNov 21, 2019 -
single-cell_sib_scilifelab Public
Forked from NBISweden/single-cell_sib_scilifelabSIB/Scilifelab autumn school in single cell omics 2019.
HTML UpdatedOct 17, 2019 -
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seurat Public
Forked from satijalab/seuratR toolkit for single cell genomics
R GNU General Public License v3.0 UpdatedOct 7, 2019 -
ngsintro-rnaseq Public
RNA-Seq course | Introduction to Bioinformatics using NGS data
HTML UpdatedMay 31, 2019 -
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scrna-cell-cycle Public
Forked from 3rweh/scrna-cell-cyclescrna-cell-cycle
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velocyto.R Public
Forked from Puriney/velocyto.RRNA velocity estimation in R
R UpdatedOct 17, 2018 -
RNAseqCourseScilife Public
Forked from SciLifeLab/coursesCourse homepages for some of the courses given at SciLifeLab
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velocyto.py Public
Forked from velocyto-team/velocyto.pyRNA velocity estimation in Python
Python BSD 2-Clause "Simplified" License UpdatedFeb 11, 2018 -
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DESeq2 Public
Forked from zihua/DESeq2This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DESeq2.html Bug Reports: https://support.bioconductor.org/p/new/pos…
R UpdatedJul 31, 2017 -
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SIMLR Public
Forked from BatzoglouLabSU/SIMLRSingle-cell Interpretation via Multi-kernel Learning (R code in master branch, Matlab code in matlab branch)
C++ GNU General Public License v3.0 UpdatedMar 7, 2017 -
HTStools Public
A mix of different tools created to handle down stream analysis
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SBATCH Public
Uppmax specific sbatch scripts for different bioniformatic programs
Java UpdatedJan 21, 2016
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