Stars
A species-optimized computational pipeline for rapid, accessible Enterobacter cloacae genotyping and surveillance
Conda recipes for the bioconda channel.
StaphScope is a comprehensive bioinformatics tool for Staphylococcus aureus genomic analysis including MLST typing, spa typing, SCCmec analysis, antimicrobial resistance detection, virulence factor…
bbeckley-hub / mlst
Forked from tseemann/mlst🆔 Scan contig files against PubMLST typing schemes
bbeckley-hub / amr
Forked from ncbi/amrAMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
EnteroMark: A species-optimized computational pipeline for rapid, accessible Enterococcus faecium genotyping and surveillance .Complete VRE genomic analysis in minutes — not hours
Kleboscope is A gene‑centric, species‑optimized computational pipeline for comprehensive Klebsiella pneumoniae genomic surveillance
A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
A genome simulator for transposable element (TE) variants
Your own personal AI assistant. Any OS. Any Platform. The lobster way. 🦞
PseudoScope is a species‑optimized, fully local computational pipeline for comprehensive genomic typing and surveillance of Pseudomonas aeruginosa. It integrates FASTA QC, MLST (Oxford scheme), PAS…
Built a reproducible R Shiny dashboard that identifies cluster-specific marker genes in single-cell transcriptomics data. Features include automated calculation of gene specificity scores ($diff = …
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AcinetoScope: A species-specific computational pipeline for rapid, comprehensive Acinetobacter baumannii outbreak investigation and resistance gene tracking
MEscope is a lightweight CLI tool for analyzing multi-omics data in ME/CFS. It integrates ERV activity, viral signals, gene expression, and methylation patterns to identify disease-associated bioma…
EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for clinical microbiology, outbreak investigations, and genomic res…
My professional bioinformatics portfolio – projects, skills, and research highlights
Multi-Bacteria Genomic Workflow
A smple genomic workflow for applied Bioinformaticians in Genomics and multi-omics analysis
Hybrid fastp + Trimmomatic inspired tool for sequencing data trimming.