A k-mer search engine for all Sequence Read Archive public accessions

QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.

A rust-native port of wfa2lib

WFA-lib: Wavefront alignment algorithm library v2

Successor of bwa-mem for short-read alignment

RAPID - R based Amplicon Pipeline for Interactive DADA2 - A unified Shiny application that takes you from raw amplicon data to ASV and taxonomy tables with DADA2, and onward to ecology visualizatio…

Implementation of ToL genome assembly workflows

LOESS (Locally Estimated Scatterplot Smoothing) implementation in Rust

DADA2, reimplemented in Rust

A comprehensive toolkit for single-cell methylation sequencing data analysis

A VIBE-CODED Sublime Text extension for interaction with Claude-Code

Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads

agentic AI coding assistant integrating claude code, OpenAI codex and Pi agent

Nextflow pipeline for generating reference databases for amplicon sequences.

A multiscale pangenome browser

OpenGL Powered Pretext Contact Map Viewer

A (very) simple script to QC Hi-C data.

HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

Whole Genome Alignment Tools

FastK based version of Merqury

A Nextflow pipeline for the assembly and binning of metagenomes from PacBio HiFi and Illumina Hi-C sequencing data.

Fast, flexible and extensible genome browser.

Documentation that simply works

strange cross-platform, performance-oriented and interactive pangenome and large graph visualization

Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.

🐙 A curated database of completed assemblies with taxonomy IDs

A robust and fast clustering method for amplicon-based studies

R package MiscMetabar: Miscellaneous functions for metabarcoding analysis

Nextflow workflow syntax highlighting and snippets for Sublime Text 4

Action to delete containers from Github container registry