Stars
✅ A curated collection of practical TypeScript patterns that improve safety, readability, maintainability, and developer experience. 🧠
An extensible and performant aligner and read mapper
A python library for decomposing and visualizing tandem repeat sequences
A modular and open-ended toolkit for WebGPU, with advanced type inference and the ability to write shaders in TypeScript
BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing
Skills for Real Engineers. Straight from my .claude directory.
Paragraph fit — a codebase-aware comment reflow tool. Wraps prose with optimal-fit line breaking; leaves directives alone. Inspired by par.
pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2
A manifesto for AI-assisted modernisation of bioinformatics software.
A list of recommended research papers and other readings on data visualization
Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data.
Per-project Postgres instances with instant snapshot & restore to support yolo development methods
Pair programming with Claude code. Turns Claude into a pair-programmer/coach who partners with you and helps you learn programming and software engineering.
General plug-and-play inference library for Recursive Language Models (RLMs), supporting various sandboxes.
The missing standard library for multithreading in JavaScript (Works in the browser, Node.js, Deno, Bun)
A fast, framework-agnostic undo/redo core powered by Mutative JSON Patch
A fast, scalable, and accurate local ancestry method.
rust tool to choose the best read alignment between haploids to a diploid reference genome