Lists (4)
Starred repositories
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
A DSL for data-driven computational pipelines
Apache Groovy: A powerful multi-faceted programming language for the JVM platform
👩💻👨💻 Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
📍 Repel overlapping text labels away from each other in your ggplot2 figures.
HPV-EM is an HPV genotyping tool that utilizes an expectation maximization algorithm to identify the presence of HPV genotypes in a sample from RNA-seq data
An opinionated view of the Tidyverse "dialect" of the R language.
Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness,…
❗ This is a read-only mirror of the CRAN R package repository. lessR — Less Code with More Comprehensive Results
🍻 Default formulae for the missing package manager for macOS (or Linux)
Accelerated BLAST compatible local sequence aligner.
Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
Open source code for AlphaFold 2.
Content for the OSCA Book.
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…