MucOneUp simulates diploid MUC1 VNTR references with variable repeats, targeted mutations, and toxic protein detection. It also integrates an Illumina read simulation pipeline for comprehensive gen…

A list of interesting genome browser and genome visualization programs

Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research

Longread PacBio sequencing processing for WGS and PureTarget

An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.

A comprehensive cancer DNA/RNA analysis and reporting pipeline

microsatellite instability detection using tumor only or paired tumor-normal data

Templates to deploy a serverless Minecraft Server on demand in AWS

Universal Command Line Interface for Amazon Web Services

Official code repository for GATK versions 4 and up

A collection of lilypond projects mostly transcribing string quartet scores.

My bagpipe tunes in Lilypond format

Some lilypond scores I work on.