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@glaParaBio

Parasite Bioinformatics at the University of Glasgow

Code of the bioinformatics facility at the Wellcome Centre for Integrative Parasitology, University of Glasgow, UK
README.md

These public repositories are bioinformatics projects developed at the Wellcome Centre for Integrative Parasitology (WCIP). They contain either standalone software for recurrent analyses or custom code for research projects.

There are also a number of private repositories for unpublished, work-in-progress research.

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  1. genetic-variant-detection-in-cell-pops genetic-variant-detection-in-cell-pops Public

    Snakemake workflow for detecting genetics variants (snp, indels, and structural variants) in cell populations

    Python 2 1

  2. genomeAnnotationPipeline genomeAnnotationPipeline Public

    You assembled a genome and now you want to annotate it with genes, proteins motifs etc.

    Python 2

  3. utils utils Public

    Collection of common utilities too small to get their own repository

    Python 4 1

  4. SpliceNova SpliceNova Public

    Detect known and unknown splicing events and test for difference across conditions

    Python 1

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