Starred repositories
quick qc on long-read alignment files. Show read-length and depth distributions
A PostgreSQL protocol adapter for SQLite databases. This project allows PostgreSQL clients to connect to and query SQLite databases using the PostgreSQL wire protocol.
Spiritual successor to picard for sequencing qc
Scan for secrets in files you plan to share
Production-grade client-side tracing, profiling, and analysis for complex software systems.
Fast genomics quality control tools for sequencing data, written in Rust.
An agentic skills framework & software development methodology that works.
A manifesto for AI-assisted modernisation of bioinformatics software.
A composable dev process for agentic coding harnesses, packaged as modular skills. Turbo has sibling editions for Claude Code and Codex.
A Textual widget for beautiful diffs in the terminal
Beginner, advanced, expert level Rust training material
A TUI for monitoring Snakemake workflows in real-time.
Identify which human reference genome was used to align a BAM/SAM/CRAM file
A terminal UI for monitoring Snakemake workflows
CLI for managing tmux sessions running AI coding agents
SeaweedFS is a distributed storage system for object storage (S3), file systems, and Iceberg tables, designed to handle billions of files with O(1) disk access and effortless horizontal scaling.
NLSpec instruction following benchmark for https://factory.strongdm.ai/products/attractor
nlspec of StrongDM's Attractor, a non-interactive Coding Agent sufficient for use in a Software Factory
A structural variant filtering and prioritization tool for long-read sequencing data
A high-performance multi-language bindings generator for Rust, up to 1,000x faster than UniFFI. Ship Rust libraries that feels native to Swift, Kotlin, and more
A single CLAUDE.md file to improve Claude Code behavior, derived from Andrej Karpathy's observations on LLM coding pitfalls.
Automate LDAP invites to Vaultwarden
⌥ AI Coding agent for the terminal — hash-anchored edits, optimized tool harness, LSP, Python, browser, subagents, and more
Claude Code learns from your corrections: self-correcting memory that compounds over 50+ sessions. Context engineering, parallel worktrees, agent teams, and 17 battle-tested skills.
Netbox agent to run on your infrastructure's servers