Self-hosted AI workspace.

A curated list of nextflow based pipelines

Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

List of software/websites/databases/other stuff for genome engineering

Phylogenetic orthology inference for comparative genomics