- Philadelphia, PA, USA
- https://www.linkedin.com/in/jonghyun-lee-08729b176/
- https://orcid.org/0000-0002-4528-5965
Starred repositories
Compress tool outputs, logs, files, and RAG chunks before they reach the LLM. 60-95% fewer tokens, same answers. Library, proxy, MCP server.
VitaminP: a vision transformer-assisted multimodal integration network for pathology cell segmentation
Highly accurate prediction of single-cell spatial transcriptomics from histology images
Haiku: Linking Spatial Biology and Clinical Histology via Tri-Modal Contrastive Learning
A parameter-efficient mixture-of-experts module for computational pathology - ICLR
AI agents running research on single-GPU nanochat training automatically
Semantica 🧠 — AI-native knowledge graph intelligence framework for semantic retrieval, ontology reasoning, context graphs, and explainable AI systems.
Decoupling common and unique representations for multimodal self-supervised learning
A Co-evolving Agentic AI System for Medical Imaging Analysis
The absolute trainer to light up AI agents.
Biomni: a general-purpose biomedical AI agent
Multimodal prototyping for cancer survival prediction - ICML 2024
Refine high-quality datasets and visual AI models
Feather - Lightweight supervised slide foundation models (ICML 2025)
An index of algorithms for offline reinforcement learning (offline-rl)
High-Resolution Image Synthesis with Latent Diffusion Models
Mapping between FinnGen phenotypes and Pan-UKBB phenotypes
Simple, unified interface to multiple Generative AI providers
Incorporating hierarchical information into MIL for patient phenotype prediction with scRNA-seq data
Scaffold decoration and fragment linking with chemical language models and RL
ScaffoldGVAE: A Variational Autoencoder Based on Multi-View Graph Neural Networks for Scaffold Generation and Scaffold Hopping of Drug Molecules
Toolkit for large-scale whole-slide image processing.
Arc Virtual Cell Atlas
Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to ex…