conda install -c ilastik-forge -c conda-forge volumina

Currently, only format supported is .npy.

Open an .npy image and display it:

# Usage: volumina image axisorder
volumina <myimage.npy> --axistags yx

axisorder should correspond to the data. Only t (time), c (channel), and the spacial axes x, y, z are valid.

To set up a development environment with ilastik, we currently recommend to follow Contributing Guidelines of our main repository ilastik: CONTRIBUTING

# do this once
conda env create -n vdev --file environment-dev.yaml
conda activate vdev
pip install -e .

Tests can be run with pytest -v.