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Stars
a set of SKILLS.md for doing bioinformatics with agents like claude code
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chem…
A Docker-based installer and runtime for Symfony. Install: download and `docker compose up`.
A high-throughput error correction pipeline for NGS data using Unique Molecular Identifiers (UMIs).
Find hypermutations or other patterns in nucleotide sequences
Light-weight, browser-based ROLAP pivot tables on top of DuckDB-WASM
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
✂️ ⚡ Rapid haploid variant calling and core genome alignment
hcovlab / dshiver
Forked from ChrisHIV/shiverSequences from HIV Easily Reconstructed
de novo virus assembler of Illumina paired reads
lightweight C implementation of name collating BAM file input and BAM file output
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Cntlm is an NTLM / NTLM Session Response / NTLMv2 authenticating HTTP proxy intended to help you break free from the chains of Microsoft proprietary world. More info on http://cntlm.sourceforge.net…
A comprehensive pipeline for HIV drug resistance identification, variant evaluation, and surveillance.
TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various us…
This repository contains scripts and data for training and utilizing machine learning classifiers to predict qPCR cross-amplification.
A sample sheet generator for Illumina sequencing
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
snipit: summarise snps relative to your reference sequence
🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing data.