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This is the accompanying git repository for the paper "A damage accumulation model reveals strategies of aging across species" DOI (add)

HTML 1 Updated Feb 10, 2026

📑 PageIndex: Document Index for Vectorless, Reasoning-based RAG

Python 32,995 2,868 Updated Jun 5, 2026

This python script will convert peptide sequences into midi music files. Rhythm is randomly determined but remains in time with a 4/4 beat

Python 1 Updated Sep 13, 2020

A curated collection of 1000+ agent skills from official dev teams and the community, compatible with Claude Code, Codex, Gemini CLI, Cursor, and more.

25,214 2,704 Updated Jun 12, 2026

An offline-first scientific writing workspace powered by Claude. LaTeX + Python + 100+ scientific skills all running locally.

TypeScript 1,573 141 Updated Jun 9, 2026
Python 6 2 Updated May 7, 2026

Repository containing notebooks and scripts associated with spatiotemporal profiling and modeling of brain across adult life

Jupyter Notebook 50 11 Updated Apr 9, 2025

A scientific plotting library in Rust

Rust 773 32 Updated Jun 12, 2026

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chem…

Python 28,120 2,890 Updated Jun 13, 2026

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.

Python 969 195 Updated Jun 13, 2026

Minipoa: A minimizer-based method for fast and memory-efficient partial order alignment

C++ 17 Updated May 23, 2026

File browser implementation for dear-imgui. C++17 is required.

C++ 830 102 Updated Sep 24, 2025

A lightweight, lightning-fast, in-process vector database

C++ 9,788 566 Updated Jun 12, 2026

Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.

Python 15 1 Updated May 14, 2026

A single-header ANSI C immediate mode cross-platform GUI library

C 11,209 677 Updated Jun 7, 2026

Banded Striped DNA Sequence Alignment

C 53 5 Updated May 9, 2023

Blazing-Fast Bioinformatic Operations on Python DataFrames

Python 166 32 Updated Jun 5, 2026

Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)

C++ 57 10 Updated Mar 4, 2024

A small, auxiliary index to massively improve parallel fastq parsing

Rust 32 1 Updated Mar 6, 2026

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

C++ 230 26 Updated Jun 12, 2026

Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs

Rust 44 2 Updated Sep 29, 2025

LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads

C 104 7 Updated Apr 8, 2026

Pangenome-based structural variation caller

Python 26 2 Updated Jan 20, 2026
Python 1 Updated May 11, 2026

Libcurl bindings for Zig

Zig 152 22 Updated Apr 24, 2026

[ICLR2026] Test-Time Scaling with Reflective Generative Model

Python 302 22 Updated Jan 28, 2026

Hierarchical Reasoning Model Official Release

Python 12,534 1,828 Updated Mar 31, 2026

Next-Gen Big Data File Format

C++ 681 37 Updated Apr 22, 2026

Collection of self-contained header-only libraries for C++17

C++ 335 14 Updated Apr 10, 2026

Tool to flag foldback and chimeric artifacts in long-read sequence alignment files

Rust 40 3 Updated Apr 28, 2026
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