safepoint-based sampling performance profiler for Ruby

Bam Read Index - Extract alignments from a bam file by readname

Jasmine: SV Merging Across Samples

Generate a single-page HTML book from Markdown files

A standalone version of the readability lib of mozilla, in Crystal

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

Miller is like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON

Configure rubygems.org credential environment variables for use in other GitHub Actions.

Sample native Android app written in pure Crystal

Odin port of unofficial libui-ng build by kojix2

Methylation Phasing for Nanopore Sequencing

Code for timing amplifications

A tool for reconstructing BFB with long reads

MethPhaser: methylation-based haplotype phasing of human genomes

PEACE pipeline to call germline and somatic variants as well as copy number aberrations and reconstruct phylogenetic trees

Linear optimization software

Framework for Metastatic And Clonal History INtegrative Analysis

A scientific plotting library in Rust

MASCoTE (Multiple Allele-specific Simulation of Copy-number Tumor Evolution) is a simulation framework to generate sequencing reads with appropriately corrections for the differences in genome leng…

Github Action to set up a Developer Command Prompt for Microsoft Visual C++

dot plotter on top of minimap2

Sequence analysis library used by Eddy/Rivas lab code

A fast K-mer counter for high-fidelity shotgun datasets

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Common image API for Crystal

A good SSG written in Crystal

Helpers for Arrow C Data & Arrow C Stream interfaces