Successor of bwa-mem for short-read alignment

A KMER-based genome-wIde Assocation testing approach on polyploids

vaginal microbial genomes analysis code

Collection of standard analytical pipelines for genomic and transcriptomic data

R package used in 'Pleiotropic heritability quantifies the shared genetic variance of common diseases'

Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hill, McFaline-Figueroa et al.

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

The repository is store some code which used for pools screening of KO MDD risk genes in vivo in mouse brain

DNA sequencing pipelines for the CARE/GLASS consortium

Method to calculate ECM neighborhoods

Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"

Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive front"

Generate Consensus Topologically Associating Domains from Multiple Prediction Tools

R package for transcriptomic biological age prediction from gene expression data

Polyploid allele identification

Spatial transcriptomics of heart tissue

A high-performance R package for single-cell genomics

Mutual connectivity (Q)-based propagation for rare cell identification