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  1. GISAID_submission GISAID_submission Public

    r script for merging the output of the genomce consensus genome QC and additional metadata to meet the format for GISAID

    R 1

  2. Rt_v2 Rt_v2 Public template

    R 1

  3. covidseq_QC covidseq_QC Public

    removes fasta files below 70% completeness threshold

  4. WNV-Foco WNV-Foco Public

    current testing env for nextstrain build

    Python

  5. TK_useful_functions TK_useful_functions Public

    toby's list of useful functions

    R 1