Tools for manipulating sequence graphs in the GFA and rGFA formats

A fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combine sequences aligned or not — all from the terminal.

Snappy, batteries-included terminal file manager with rich previews, inline images, bulk actions, and trash support

Genome assembly evaluation tool

dot plotter on top of minimap2

syncmer graphs, and perhaps other sorts of sequence graphs

Telomere-to-Telomere diploid Indian Genome

Nanopore sequence read simulator

Nanopore Adaptive Sampling VARiant caller

An extensible and performant aligner and read mapper

A library for easy, fast, and efficient reading & writing of PLINK Bed files

Point Cloud Local Ancestry Inference (PCLAI) on HPRC Release 2 samples

Point Cloud Local Ancestry Inference (PCLAI)

Code used in analysis/figure generation as part of the T2T COLO829BLT manuscript:

KaryoScope: rapid, alignment-free sequence annotation for the pangenome era

rust tool to choose the best read alignment between haploids to a diploid reference genome

DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.

Create an NGx plot to compare assembly contiguity.

A very fast implementation of tldr in Rust.

Bring AI agents into Obsidian via Agent Client Protocol (ACP), such as Claude Code, Codex and Gemini CLI.

Multiple sequence alignment of long tandem repeats

符合nature论文学术表达和科研绘图的Skill

Run a command and report its process tree's CPU, memory, and I/O usage

Jasmine: SV Merging Across Samples

A method to joint-call RNA isoforms across many IsoSeq samples

KIV2/D4Z4 genotyper using HiFi WGS data

Share a single keyboard and mouse between multiple computers.

A terminal dashboard for realtime Slurm monitoring