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Starred repositories
A tool for visualizing alignments of reads in regions containing tandem repeats
This repository contains data indexes from NIST's Genome in a Bottle project.
MucOneUp simulates diploid MUC1 VNTR references with variable repeats, targeted mutations, and toxic protein detection. It also integrates an Illumina read simulation pipeline for comprehensive gen…
Mapping-free variant caller for short-read Illumina data
Python package and CLI for data retrieval from Varvis SaaS Platform API.
A deterministic, low-memory genomics engine in Rust — run whole-genome workloads on your laptop. Declare your RAM, get a verifiable receipt, and reproduce results byte-for-byte.
GitHub Copilot CLI brings the power of Copilot coding agent directly to your terminal.
Development Containers: Use a container as a full-featured development environment.
The financial transactions database designed for mission critical safety and performance.
Review-first terminal diff viewer for agentic coders
Tools for plotting methylation data in various ways
Nextflow pipeline to analyze ONT-UMI-Sequencing data
XOOS (sbX Optimized Open Source) Analysis Tools 🧬
Conda recipes for the bioconda channel.
Mulled - Automatized Containerized Software Repository
Spiritual successor to picard for sequencing qc
A single CLAUDE.md file to improve Claude Code behavior, derived from Andrej Karpathy's observations on LLM coding pitfalls.
aider is AI pair programming in your terminal
Low-level unprivileged sandboxing tool used by Flatpak and similar projects