Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…

GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

An R package for working with LaminDB instances.

The agent harness for building analytics into your app on top of ClickHouse, Redpanda and other high-performance analytical infrastructure

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

Builds a PEP from SRA or GEO accessions

Collection of Svelte components to build highly interactive applications.

Registries for biological ontologies.

Use cases for LaminDB.

Flow & mass cytometry analytics.

Open-source data lakehouse for biology. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & ontologies. 🍊YC S22

Run Lamin on Saturn Cloud.

Read fcs files.

Light-weight Jupyter notebook tracker.

Python DataFrames as Interactive DataTables

A python parser for reading fcs files supporting FCS 2.0, 3.0, 3.1

A tool to find sequencing data and metadata from public databases.

🧬 gget enables efficient querying of genomic reference databases

翻墙-科学上网

A registry of publicly available datasets on AWS