Starred repositories
Knowhere extracts, parses, and outputs structured chunks ready for AI Agents and RAG.
Markdown rendering + Latex extras (equations, tables, ...), with conversion features, for the scientific community
Translate full-length books and documents with Ollama, OpenAI (comptatible), Gemini, Mistral, Poe or OpenRouter. Preserves formatting. Resumes where you left off. No file size limits.
A visual, example-driven guide to Claude Code — from basic concepts to advanced agents, with copy-paste templates that bring immediate value.
PDF craft can convert PDF files into various other formats. This project will focus on processing PDF files of scanned books.
Elevate your AI research writing, no more tedious polishing ✨
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chem…
Skill package for ML/CV/NLP paper writing, curated and adapted from Prof. Peng Sida's open notes for Codex, Claude Code, and Gemini.
a set of SKILLS.md for doing bioinformatics with agents like claude code
Skills for Real Engineers. Straight from my .claude directory.
The agent that grows with you
HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
AI agents running research on single-GPU nanochat training automatically
A multimodal model predicting chromatin-associated proteins binding on the human genome.
TEtrimmer: a novel tool to automate manual curation of transposable elements
Cross-platform software to draw phylogenetic trees
Tool for plotting sequencing data along genomic coordinates.
Fully automated end-to-end framework to extract data from bar plots and other figures in scientific research papers using modules such as OpenCV, AWS-Rekognition.
An open-source AI agent that brings the power of Gemini directly into your terminal.
非线智能 NoneLinear - ReLE评测：中文AI大模型能力评测（持续更新）：目前已囊括374个大模型，覆盖chatgpt、gpt-5.4、谷歌gemini-3.1-pro、Claude-4.6、文心ERNIE-X1.1、ERNIE-5.0、qwen3.6-max、qwen3.6-plus、百川、讯飞星火、商汤senseChat等商用模型， 以及step3.5-flash、kimi-…
Readest is a modern, feature-rich ebook reader designed for avid readers offering seamless cross-platform access, powerful tools, and an intuitive interface to elevate your reading experience.
Fair-code workflow automation platform with native AI capabilities. Combine visual building with custom code, self-host or cloud, 400+ integrations.
SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
This package contains the original 2012 AlexNet code.
Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.
A pipeline for predicting and masking transposable elements in multiple genomes.