Stars
An open-source, code-first Python toolkit for building, evaluating, and deploying sophisticated AI agents with flexibility and control.
Fair-code workflow automation platform with native AI capabilities. Combine visual building with custom code, self-host or cloud, 400+ integrations.
Publication-ready volcano plots with enhanced colouring and labeling
AUCell: score single cells with gene regulatory networks
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…
LIANA+: an all-in-one framework for cell-cell communication
A Bayesian model for compositional single-cell data analysis
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
Python library to handle Gene Ontology (GO) terms
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
Long read sequencing pipeline to identify variants in patients with neurodevelopmental disorders
Research code accompanying AlphaGenome
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
Web app for interacting with Google DeepMind's AlphaGenome model — interval predictions, variant effect analysis, and visualization
Filtering of PDX samples for mouse derived reads
Options for running ProteoWizard applications via containers (e.g. Docker)
Workflow solutions for mass-spectrometry based non-target analysis.
A cross-platform proteomics data analysis suite
R Package for preprocessing, normalizing, and analyzing proteomics data
docker file and associated files for running KNIME inside the docker accessible via VNC
A library for QC report based on MultiQC framework
The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"