R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"

Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)

Summary-level Unified Method for Modeling Integrated Transcriptome

Optimizing transcriptome prediction models for use in multi-ethnic TWAS using multivariate adaptive shrinkage.

Analysis of transcriptome imputation using paired genotype-expression data from SAGE and GEUVADIS

A Haplotype-Resolved Transcriptome-Wide Association Framework.

LocusXcanR: an R package that creates an R Shiny application that aids TWAS interpretation, can be extended to other ‘omics data, and highlights R Shiny’s effectiveness at presenting results in an approachable, interactive, and visual format.

Code to generate the data and website for Rat TWAS Hub

Factored QTL analysis applied to GTEx and GWAS of 114 complex traits