This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration free energies or ligand binding free energies.
This package is a python library with tools for the Molecular Simulation - Software Gromos. It allows you to easily set up, manage and analyze simulations in python.
A gromacs tutorial for creating a gromos54A7 simulation system of a protein in a simple membrane
A lightweight Rust library for classical molecular dynamics potentials. It provides modular force field components (LJ, bonds, angles, torsions) supporting major systems like DREIDING, AMBER, and GROMOS. Built on a branchless, zero-cost architecture, it delivers high-performance physics kernels for no-std scientific computing.
Advanced tutorial for the GROMOS software for biomolecular simulation
GROMOS Software for (Bio)molecular Simulation: md++ code
GROMOS++ Software for the Analysis of (Bio)molecular Simulation Trajectories
GROMOS molecular-dynamics simulations of biomolecular system: force-field parametrization, β-peptide & protein dynamics, liquid properties, alchemical free energies (thermodynamic integration), and NMR/NOE structure refinement, each benchmarked against experiment.
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