The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)

omopcept : an R package to access OMOP conCEPTs (no cons!) and flexible tidyverse compatible R functions for querying and visualising.

R SDK for OMOP/OHDSI vocabularies. Query 10M+ medical concepts across SNOMED, ICD-10, RxNorm, LOINC & 90+ terminologies via simple API

This repo contains analysis performed for paper "A comparative patient-level prediction study in OMOP CDM – insights from study on synthetic data".

SCCRIP (Sickle Cell Clinical Research and Intervention Program) established a longitudinal cohort at multiple sites with Sickle Cell Disease (SCD) in 2014 managed by St. Jude Clinical Hematology. A new collaborator for SCCRIP has longitudinal data for 600 SCD patients in OMOP CDM format and this effort is to convert OMOP CDM to SCCRIP format.

SOCRATex: Staged Optimization of Curation, Regularization, and Annotation of clinical Text

Transformation from PRIAS to the OMOP CDM

OHDSI Data Quality Dashboard in a Docker image

Summary of OMOP data and display in a public data catalogue

Benchmarking LLM-assisted OMOP phenotype curation: concept-level vs patient-level F1 on MIMIC-IV, with phenotype-aware methodology improvements.

OMOP treatment trajectory modeling pipeline in R (DuckDB + LCA/GBTM)