Stars
Cross-platform software to draw phylogenetic trees
Instantaneous Metagenome Taxonomic Profiling with MetaKSSD
Nanomotif - a tool for identifying methylated motifs in metagenomic samples
Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all
CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic comparison. JSON · CSV · TSV · stdin.
Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python with AI-powered optimization proposals
TAXnomic Profile Aggregation and STAndardisation
Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene…
Assessing the quality of metagenome-derived genome bins using machine learning
A toolkit for analyzing and visualizing phylogenetic placement data
A custom desktop browser for TiddlyWiki 5 and TiddlyWiki Classic, based on nw.js
Fast genome and metagenome distance estimation using MinHash
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Supports defining 'pipelines' of workers in Sidekiq
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Accelerated BLAST compatible local sequence aligner.
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis