Stars
A fast, programmable molecular viewer for research, scripting, and the web
An easy-to-use, flexible website template for labs. https://doi.org/10.5281/zenodo.17228741
A faithful and open-source remake of Cave Story's engine written in Rust
Making Fabio Crameri's perceptually uniform colourmaps for geosciences available on PyPI and conda-forge
Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
A BioIO reader plugin for reading bioformats formatted images.
A Learning-to-Optimize (L2O) package for Mixed-Integer Nonlinear Programming (MINLP)
An agentic skills framework & software development methodology that works.
The open agent skills tool - npx skills
A recast of cell segmentation models built on the Burn deep learning framework.
Image-processing software for cryo-electron microscopy
Intuitive, easy CLIs based on python type hints.
Modern Bio-Formats wrapper with clean lazy Python API
tlambert03 / bffile
Forked from imaging-formats/bffileYet another Bio-Formats wrapper for Python
macOS app to manage your Codex skills
Apache Groovy: A powerful multi-faceted programming language for the JVM platform
Base Scipion application that is based on pyworkflow and all extension plugins
A curated list of awesome computational cryo-ET methods.
A curated list of awesome computational cryo-EM methods.
Virtual whiteboard for sketching hand-drawn like diagrams
Pyrallis is a framework for structured configuration parsing from both cmd and files. Simply define your desired configuration structure as a dataclass and let pyrallis do the rest!
git-annex-turtle provides Apple Finder integration for git-annex on macOS, including custom badge icons, contextual menus and a Menubar icon. It is free, open-source and licensed under The MIT Lice…
Zulip server and web application. Open-source team chat that helps teams stay productive and focused.