Starred repositories
Master the fundamentals of machine learning, deep learning, and mathematical optimization by building key concepts and models from scratch using Python.
Constava analyzes conformational ensembles calculating conformational state propensities and conformational state variability.
LOGOS (Language Of Generative Objects in Science) is the first multi-domain generative foundation model for the natural sciences built on a unified scientific grammar, enabling unified generative m…
A curated collection of practical AI projects implementing OCR systems, RAG, AI agents, and other AI use cases.
Desktop app to manage markdown knowledge bases
Native macOS app for Pi coding-agent. Browse, resume sessions, and run Pi terminal tabs locally or over SSH.
MiMo Code: Where Models and Agents Co-Evolve
LLM Wiki is a cross-platform desktop application that turns your documents into an organized, interlinked knowledge base — automatically. Instead of traditional RAG (retrieve-and-answer from scratc…
Build a ChatGPT like LLM from scratch in PyTorch, explained step by step.
[ICML 2026] Official resources of "Graph-R1: Towards Agentic GraphRAG Framework via End-to-end Reinforcement Learning".
A straightforward method for training your LLM, from downloading data to generating text.
AI Powered Knowledge Graph Generator
A curated list of community detection research papers with implementations.
SpatialPPIv2: Enhancing protein–protein interaction prediction through graph neural networks with protein language models.
🍃 Cross-platform CalDAV-compatible task management app.
The agent that grows with you
🤗 ml-intern: an open-source ML engineer that reads papers, trains models, and ships ML models
🐚bash/POSIX-compatible shell implemented in Rust 🦀
Curated mass spectrometry evidence for MHC ligand data from IEDB and CEDAR
Agent skills for drafting, revising, auditing, and resubmitting Nature-style journal manuscripts.
A Snakemake executor plugin for submitting jobs to a SLURM cluster
Drop-in Apache Spark replacement written in Rust, unifying batch processing, stream processing, and compute-intensive AI workloads.
A minimal PyTorch re-implementation of AlphaFold2's model & training
Learning Protein–Protein Binding Free Energies from Interface Graphs and Physicochemical Descriptors
Stanford NLP Python library for Representation Finetuning (ReFT)