Tags: MtoLStoN/CENSO
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Devel (grimme-lab#23) * consider_unconverged option implemented and introduce prog2opt * option for reconsidering conformers that were removed during geometry optimization based on the energy threshold * using a different QM code only for the geometry optimization imposes the condition that the functional func is available in both QM programs * updated tm_job concerning cefine/define error printout * rename of opt_limit --> part2_threshold and part2_threshold --> part2_P_threshold * added environment in all subprocess calls * added better printout to parallelization * avoid error if user/home/ is read-only; add revTPSS for NMR; printout for nmrprop.dat * better tracking of which external codes are required * fix output for unchecked basis sets * removed .chrg .uhf per conformer redundant information .censorc now tm or orca dependent saving info on converged optimizations in case of crashes for large ensembles * removed crash because of None-type when COSMO-RS is requested, but no cefine for TM is available * Catch OSError which is related to system-related errors, including I/O failures such as “file not found” or “disk full” to keep the python instance alive * created user-editable ORCA input which will be added to every ORCA input and used as provided by the USER without any checks (version or correct spelling) * added files to censo_assets * update in tutorials and small corrections * better printout * added bromoform and 1,2-dibromoethane * improved -h help page
improved solvent handling (grimme-lab#15) - added solvents dichloroethane and octane to solvents list - print clearer warning if solvent is not parameterized for the respective solvent model (and a replacement solvent is employed) - improved the automated SI generation (e.g. ALPB information) - improved the printout of the available density functionals in the tutorial option crenso -tutorial - added an option for the calculation of vapor_pressure in combination with crenso 1.0.4 and COSMO-RS * vapor pressure calculation possible for COSMO-RS file same_solvents.json contains information on other needed solvent parameters e.g. { "same":{ "cosmors": ["same", "same"], "dcosmors": [null, "thf"], "xtb": [null, "thf"], "cpcm": [null, null], "smd": [null, null], "DC": 7.8 } }
v1.1.0 CENSO (grimme-lab#14) • printout number of structures in part4/ part5 • fix for pyinstaller created binaries on some suse systems concerning LD_LIBRARY_PATH • new functional handling, which also enables use of different dispersion corrections • updated nmr_ref data (shielding constants) to include the basisS information • improved automated supporting information creation • restart at different temperature possible if other temperatures have been calculated before (get Boltzmann factors at different temperatures) • gbsa_gsolv, alpb_gsolv, smd_gsolv from now on can be used at different temperatures, but they do not have a temperature dependence! • more precise error ouput
devel (grimme-lab#12) • work in progress: automatic supporting information (SI) generation (with bib entries) • new printout showing the number of conformers within an energy window • symmetry number correction (for part1) because of (DFT) unoptimized geometries • the configuration file location information is saved and automatically reloaded on restart • printing command line argument call at program startup • experimental “read only” feature to fill the enso.json information by only reading the output of previous calculations (the program input arguments have to be exactly the same!) • fixed NMR shielding constant calculations and MORead • NMR new printout of min and max calculated shielding constants per investigated nuclei • OR new printout of min and max OR value and corresponding conformers • fixed balance option and wrong xtb call • improved restarting of optical rotation calculations • tutorial option has details on solvents and naming within CENSO, and information on functionals for OR is updated • improved optimization routine
symmetry in G_mRRHO (grimme-lab#10) • better time printout, which also includes restarts • symmetry in the G_mRRHO contribution is always detected, but its contribution to S_rot can be switched on and off by CENSO -consider_sym without the need to recalculate • if new censorc remote configuration files are created and an existing .censorc is found the program paths can be copied to the new censorc • printout of OR data to file • printout of NMR data to file • new option to creat a censo.inp file from all settings set by command line
cleanup includes amat.tmp files (grimme-lab#9) * cleanup_all removes amat.tmp files which can be quiet large (several Mb) * update README
README update (grimme-lab#6) * more functionals for func3 available * SD on OR and NMR available for a fixed value of 0.4 kcal/mol
improvements * added progress option to track CENSO progress using printout to stderr * updated NMR kt2 reference shielding constants * fixed wb97x-V in TM ($disp3) * updated README * added information functional availability in -tutorial * added load_balancing automatical O and P balance * corrected NMR SD of sigma * created censo_nmr_ref.json for user editable shift references
Devel fabian (grimme-lab#4) * added progress option to track CENSO progress using printout to stderr * version bump
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