DEFT: Decompositional Efficient Fine-Tuning for Text-to-Image Models (NeuralPS 2025)

Point-Scanning Super-Resolution 2

A universal fluorescence microscopic image restoration algorithm

Testing adaptation of the DINOv2/3 encoders for vision tasks with Low-Rank Adaptation (LoRA)

Reference PyTorch implementation and models for DINOv3

Pretraining a foundation model for generalizable fluorescence microscopy-based image restoration

SSR-SIM: Bio-friendly and high-precision super-resolution imaging through self-supervised reconstruction structured illumination microscopy

library for diSPIM analysis

[MICCAI 2025] This is the official code for the paper "Lightweight Data-Free Denoising for Detail-Preserving Biomedical Image Restoration"

Tensorflow/keras implementation for image transformation from low-resolution (LR) image to super-resolved one, including single wide-field (WF) image super-resolution prediction and SIM reconstruct…

A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images

An adaptation of 3D Gaussian Splatting for volumetric reconstruction from 2D slice-based scientific imaging data (e.g., microscopy, CT scans).

This package is the companion code to our paper, Phase diversity-based wavefront sensing for fluorescence microscopy.

pytorch structural similarity (SSIM) loss for 3D images

Automatic detection of beads for PSF measurement from Z-Stacks using python-bioformats.

Fast and Accurate 3D PSF Computation for Fluorescence Microscopy

2D and 3D image deconvolution with python

Airyscan image reconstruction

A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.

AOViFT: Adaptive Optical Vision Fourier Transformer

Python bindings for scalar and vectorial models of the 3D microscope point spread function.

3D volume rendering using napari

PSF Generator: a PyTorch-based library to simulate point spread functions for microscopes.

Image analysis pipelines for analysis of MitoTracker and Phalloidin staining in Zeiss Airyscan super resolution microscopy images

Repository with python scripts and notebooks to crop or split raw airyscan data

Airyscan image reconstruction

Resolution Enhancement Algorithm using Deblurring by Pixel Reassignment. This repository implements cutting-edge techniques for improving image resolution and clarity by reassigning pixels to corre…

The Huygens Remote Manager is an open-source, efficient, multi-user web-based interface to the Huygens software by Scientific Volume Imaging for parallel batch deconvolutions.