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Commits on Mar 2, 2017

• Merge pull request #817 from brentp/anno

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• simplify logic for gemini annototate

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Commits on Feb 24, 2017

• add vep extras even under -t all

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Commits on Feb 21, 2017

• Merge pull request #815 from brentp/no-pyparsing

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• remove dependency on pyparsing as it is unused.

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Commits on Feb 16, 2017

• Update Miniconda download with changed URL

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Commits on Jan 26, 2017

• Include cyvcf2 when running GEMINI upgrade Fixes #808

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Commits on Jan 24, 2017

• Merge pull request #810 from brentp/gem-anno

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• termination in gemini annotate. closes #809.

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Commits on Jan 6, 2017

• Merge pull request #805 from jxchong/patch-1

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• Update tools.rst

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Commits on Jan 5, 2017

• Merge pull request #804 from brentp/issue791

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• give amend columns a type. closes #791

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Commits on Dec 6, 2016

• Merge pull request #800 from brentp/stderr

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• don't send stderr to check_call explicitly.

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Commits on Dec 5, 2016

• Merge pull request #799 from brentp/bcsq

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• support for bcftools bcsq

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Commits on Nov 29, 2016

• Merge pull request #797 from brentp/transaction

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• dont rollback if not in transaction

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Commits on Nov 7, 2016

• Merge pull request #794 from brentp/py3

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Commits on Nov 1, 2016

• additional test change

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Commits on Oct 11, 2016

• Merge pull request #788 from naumenko-sa/master

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• modified: docs/content/database_schema.rst

  

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Commits on Oct 4, 2016

• more python3 updates.

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Commits on Sep 30, 2016

• more python3 stuff

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Commits on Sep 28, 2016

• unicode stuff for clinvar

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Commits on Sep 27, 2016

• more python3 stuff

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• python3. re #781

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Commits on Sep 23, 2016

• Update README.md

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Commits on Sep 20, 2016

• Merge pull request #783 from brentp/test-fix

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• sort was behaving differently on different machines

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Commits on Aug 23, 2016

• Merge pull request #777 from brentp/anno-fix

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• update error for boolean

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• Merge pull request #776 from brentp/annotate-empty-chunk

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• closes #112. when we got a chunk where no hits were found, got an error.

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