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fix scaffold clustering error handling

Status: Open.

#251 In OpenFreeEnergy/konnektor;

· atravitz opened on Jun 3, 2026

rename Intermediator

Status: Open.

#247 In OpenFreeEnergy/konnektor;

· atravitz opened on May 29, 2026

add references in user guides

Status: Open.

#245 In OpenFreeEnergy/konnektor;

· atravitz opened on May 29, 2026

Implement or remove CyclicConcatenator

Status: Open.

#244 In OpenFreeEnergy/konnektor;

· atravitz opened on May 29, 2026

fix n_processes assignment in concatenator

Status: Open.

#243 In OpenFreeEnergy/konnektor;

· atravitz opened on May 29, 2026

remove _initial_edge_lister from MstConcatenator

Status: Open.

#240 In OpenFreeEnergy/konnektor;

· atravitz opened on May 28, 2026

resolve progress and show_progress kwarg discrepancy

Status: Open.

#239 In OpenFreeEnergy/konnektor;

· atravitz opened on May 28, 2026

ligand_networks don't roundtrip when generated with ExplicitNetworkGenerator and multiprocessing

Status: Open.

#221 In OpenFreeEnergy/konnektor;

· atravitz opened on Mar 4, 2026

fix rdkit warnings

Status: Open.

#206 In OpenFreeEnergy/konnektor;

· atravitz opened on Jan 8, 2026

clean up all docstrings

Status: Open.

#177 In OpenFreeEnergy/konnektor;

· atravitz opened on Aug 26, 2025

konnektor transparency improvements for usability

Status: Open.

#166 In OpenFreeEnergy/konnektor;

· atravitz opened on Jun 16, 2025

fix progress bars

Status: Open.

#161 In OpenFreeEnergy/konnektor;

· atravitz opened on Jun 10, 2025