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Commits on Mar 6, 2025

• Update README.md

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• Update abcIBS.h

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• Update abcIBS.cpp

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Commits on Nov 14, 2024

• -rmSNPs 1 does stop when SNP_pval is not called

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Commits on Feb 6, 2024

• Update chisquare.h

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Commits on Aug 20, 2023

• Update Makefile

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• There is a recent pull request that using the new --shuffle option for testing for concurrency issues PR#590 found an issue. After looking into it there was indeed atleast two problems that this co…

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Commits on Jul 13, 2023

• Merge pull request #586 from ANGSD/howOften_bug_isinaltinkaya_230712

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Commits on Jul 12, 2023

• [fix] Add howOften value check, add disable option

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Commits on May 22, 2023

• Merge pull request #577 from ANGSD/dev_fix_assert

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• [fix] Add missing paranthesis to assert macro

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Commits on May 7, 2023

• Merge pull request #573 from ANGSD/dev_osx_build

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• [build] Remove install -D to support osx build

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Commits on Apr 7, 2023

• Merge pull request #569 from ANGSD/develop

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• [fix] Add VCF spanning deletion check

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Commits on Feb 25, 2023

• Merge pull request #560 from abigailramsoe/branchy

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• cleaner error if no SNP sites

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• Updated bfgs routine such that the gradient derivate function allows for the inclusion of a user struct

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Commits on Feb 6, 2023

• added option to keep non-polymorphic sites instead of remvoing them(without a bug this time)

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• added option to keep non-polymorphic sites instead of remvoing them

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Commits on Nov 9, 2022

• [fix] Fixed other places where we did not reset to 1. when we had very low likelihoods. e8f8c02

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Commits on Nov 8, 2022

• [fix] haploid saf would in some scenarios fail if all genotype likelihoods were very unlikely. @nspope

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Commits on Oct 31, 2022

• Merge pull request #539 from ANGSD/dev_isinaltinkaya_221031_1418

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• [fix] Add -D__STDC_FORMAT_MACROS to FLAGS for C99

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• Merge pull request #528 from ANGSD/bugfix

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Commits on Oct 13, 2022

• Preparing new 0.941 version

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Commits on Oct 12, 2022

• Merge pull request #533 from ANGSD/fixassert_isinaltinkaya_221008_1207

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• Merge branch 'fixassert_isinaltinkaya_221008_1207' of github.com:angsd/angsd into fixassert_isinaltinkaya_221008_1207

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• [fix,feat] Update ASSERT macro to better form

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• Merge pull request #532 from ANGSD/master

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• [fix] Add assertFailed doAssert,ASSERT macro

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• [test] Update actions checkout to v3

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• [test] Add manual trigger for GitHub actions

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Commits on Oct 11, 2022

• [fix]: Replace assert statements with aio assert

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Commits on Oct 7, 2022

• [fix] Fix compiler flags related sites parsing issue, fixes #527

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