Claude Code is an agentic coding tool that lives in your terminal, understands your codebase, and helps you code faster by executing routine tasks, explaining complex code, and handling git workflo…

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scoreCT: Automated Cell Type Annotation

devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.

SCSA: cell type annotation for single-cell RNA-seq data

CZ CELLxGENE Discover Census

Analyzing metagenomics of single cell RNA-seq

Bostongene cell deconvolution algorithm from RNAseq

MrBiomics: Composable modules and recipes automate bioinformatics for multi-omics analyses

parallel fastq-dump wrapper

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair

Query the gene models of a given organism/assembly

A package for including transposable elements in differential enrichment analysis of sequencing datasets.

ALL IN ONE Hacking Tool For Hackers

Differential expression analysis for single-cell RNA-seq data.

Scripts for analyzing Next-Generation Sequencing data

RNA Velocity generalized through dynamical modeling

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

SeqAn's official repository.

Conda recipes for the bioconda channel.

Highly optimized genomic resources for GPUs

GEM-Mapper v3

python module to plot beautiful and highly customizable genome browser tracks

A collection of reusable WDL tasks. Category:Other

NGLess: NGS with less work

A collection of resources for learning about tools and programming languages related to Bioinformatics

A python extension for quick access to bigWig and bigBed files

RNAseq analysis notes from Ming Tang