Mealie is a self hosted recipe manager and meal planner with a RestAPI backend and a reactive frontend application built in Vue for a pleasant user experience for the whole family. Easily add recip…

A black hole for Internet advertisements

Mirror only. Official repository is at https://git.zx2c4.com/wireguard-linux

🏡 Open source home automation that puts local control and privacy first.

Realtime log viewer for containers. Supports Docker, Swarm and K8s.

Import social media post to your mealie instances for now only compatible with instagram reels

dnscrypt-proxy 2 - A flexible DNS proxy, with support for encrypted DNS protocols.

Interactive Data Visualization in the browser, from Python

Shiny for Python

Data validation using Python type hints

Plugins for the Ensembl Variant Effect Predictor (VEP)

NEAT read simulation tools

Phenotype driven gene prioritization for HPO

NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.

Configure workflow/pipeline tests using yaml files.

A collection of reusable WDL tasks. Category:Other

A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample

WDL implementation of the TALON workflow. Category:Multi-Sample InDevelopment

Worksheets to get started with the python software stack

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/7204…

An overview of all nanopack tools

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

A tool to identify, orient, trim and rescue full length cDNA reads

Full-Length Alternative Isoform analysis of RNA

Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

Tool for the Quality Control of Long-Read Defined Transcriptomes

Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads