A curated list of resources for using LLMs to develop more competitive grant applications.

Universal framework for physically based computational protein design

Najmanovich Research Group Toolkit for Elastic Networks

A fast static index for 2D points

View proteins and trajectories in the terminal

Software for the visualization of sequence-function relationships

An up-to-date and explanatory Python project skeleton with continuous integration services.

Hands-on workshop showing good software development practices to create a Python package.

Direct coupling analysis software for protein and RNA sequences

OpenMM is a toolkit for molecular simulation using high performance GPU code.

Python package for handling IHM mmCIF and BinaryCIF files

Rigid body fitting of atomic strucures in cryo-electron microscopy density maps

Pymol ScrIpt COllection (PSICO)

C-library for calculating Solvent Accessible Surface Areas

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

Webpage of the Bonvinlab @ Utrecht University and HADDOCK software

Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - MATLAB version

A Python Package for Protein Dynamics Analysis

Fraction of Common Contacts Clustering Algorithm for Protein Structures

Official git repository for Biopython (originally converted from CVS)