Starred repositories
Your own personal AI assistant. Any OS. Any Platform. The lobster way. 🦞
Examples and guides for using the OpenAI API
PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and visualize results. To contribute, fork and make PRs to the deve…
marcorusc / PhysiBoSS
Forked from PhysiBoSS/PhysiBoSSPhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
Step-by-step Agent-Skills Workshop, ScaDS.AI Meetup
European Summer of Code 2026 - Information and Projects
This folder host the supplementary materials generated by different LLMs to test the MCP server orchestration with different output but same prompt input.
A repository that stores all the MCP servers for creating biological mechanistic models. It includes server for NeKo, MaBoSS, PhysiCell/PhysiBoSS.
LORIS is a web-accessible database solution for longitudinal multi-site studies.
Agent Skill for Morpheus multicellular simulation — write MorpheusML XML, run simulations, debug failures
This page hosts NeKo, a python package that allow the user to automatically build gene regulatory networks from any databases.
This is a planning repository where I develop Tidyverse-related workshops.
Computer Vision Toolkit. cvkit is available for Linux as well as for Windows. It offers useful tools for viewing and analyzing images and 3d models.
AI Agents for drug discovery, drug development, and other pharmaceutical R&D
Read-only repository for the package "metapsyTools".
Read-only repository for the package "metapsyData".
⚡️ 10x - Up to 20x faster AI coding with multi-step Superpowers. Open-source agent with smart model routing, BYOK, fully self-hosted.
Production-ready platform for agentic workflow development.
There can be more than Notion and Miro. AFFiNE(pronounced [ə‘fain]) is a next-gen knowledge base that brings planning, sorting and creating all together. Privacy first, open-source, customizable an…
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology