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Starred repositories

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snakmeke pipeline to precess scNanoHi-C data

R 9 2 Updated Mar 23, 2026

Autoregressive Model Beats Diffusion: 🦙 Llama for Scalable Image Generation

Python 1,947 93 Updated Aug 15, 2024

DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.

Python 42,136 4,799 Updated Apr 17, 2026

BioNeMo Framework: For building and adapting AI models in drug discovery at scale

Jupyter Notebook 724 142 Updated Apr 16, 2026

scDNAm-GPT: A Foundation Model for Analyzing Single-Cell Whole-Genome Bisulfite Sequencing

Jupyter Notebook 19 6 Updated Nov 30, 2025

This is the official codebase for methylGPT : a foundation model for the DNA methylome.

Jupyter Notebook 55 14 Updated Mar 5, 2026

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Python 3,336 668 Updated Dec 16, 2025

A curated list for awesome discrete diffusion models resources.

553 22 Updated Sep 9, 2025

Measures and metrics for image2image tasks. PyTorch.

Python 1,567 120 Updated May 12, 2024

A direct Google Cloud Storage integration for PyTorch

Python 46 7 Updated Mar 25, 2026

Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)

Jupyter Notebook 20 3 Updated Oct 7, 2021

Apache Arrow is the universal columnar format and multi-language toolbox for fast data interchange and in-memory analytics

C++ 16,675 4,071 Updated Apr 17, 2026

FlexTok: Resampling Images into 1D Token Sequences of Flexible Length

Jupyter Notebook 310 13 Updated Jun 2, 2025

Unofficial Documentation of Robinhood Trade's Private API

1,761 317 Updated May 8, 2024

Implementation of Rotary Embeddings, from the Roformer paper, in Pytorch

Python 806 66 Updated Jan 30, 2026

Implementation of Denoising Diffusion Probabilistic Model in Pytorch

Python 10,506 1,269 Updated Feb 11, 2026

Vector (and Scalar) Quantization, in Pytorch

Python 3,899 325 Updated Mar 30, 2026

Pretraining infrastructure for multi-hybrid AI model architectures

Python 227 29 Updated Feb 20, 2026

Genome modeling and design across all domains of life

Jupyter Notebook 3,819 480 Updated Mar 20, 2026

Taming Transformers for High-Resolution Image Synthesis

Jupyter Notebook 6,473 1,225 Updated Jul 30, 2024

[NeurIPS 2024 Best Paper Award][GPT beats diffusion🔥] [scaling laws in visual generation📈] Official impl. of "Visual Autoregressive Modeling: Scalable Image Generation via Next-Scale Prediction". A…

Jupyter Notebook 8,670 566 Updated Nov 10, 2025

A network filesystem client to connect to SSH servers

C 7,366 533 Updated Apr 15, 2026

Performant Pythonic GenomicRanges

Python 494 50 Updated Jan 27, 2026

Python package for hypergraph analysis and visualization.

Python 691 109 Updated Apr 14, 2026
Jupyter Notebook 17 5 Updated May 14, 2025

ftp client/server for asyncio (https://aioftp.rtfd.io/)

Python 209 61 Updated Sep 24, 2025

Extremely simple and fast word2vec implementation with Negative Sampling + Sub-sampling

Python 191 54 Updated Jan 21, 2021

Notes on single-cell Hi-C technologies, tools, and data

88 9 Updated Feb 28, 2026

A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

205 33 Updated Feb 27, 2026

Tools to analyze Dip-C (or other 3C/Hi-C) data

Python 75 24 Updated Mar 28, 2026
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