pyFoldX: python bindings for FoldX.

Software for inferring protein stabilities from phylogenies

PoSE: (Pattern of Sequence Evolution) provides visualization and annotation of amino acid substitutions to help determine major patterns during sequence evolution of protein-coding sequences, hyper…

🎄Visualization and annotation of phylogenetic trees

Material for the reassortment rates across influenza viruses and pairs of segments papers

Beast2 implementation of the coalescent with reassortment

Within-host diversity in H5N1-infected humans and poultry in Cambodia

Evolution and spread of a reassortant A/H3N2 virus in the 2017-2018 influenza season

Dengue antigenic variation and evolutionary dynamics

Python 3 version of Baltic.

Adapting script from https://github.com/blab/siv-cst

Pathogen NGS data processing

A pipeline for detection and extraction of accurate whole genome consensus of Influenza virus from clinical samples or primary passages

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

Posterior Analysis of Coalescent Trees

Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission