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Starred repositories

5 stars written in Java
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Official code repository for GATK versions 4 and up

Java 1,937 625 Updated Apr 14, 2026

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Java 263 77 Updated Dec 19, 2025

phenol: Phenotype ontology library

Java 25 5 Updated Dec 5, 2025

Scripts to create and update RegIN files used by CyTargetLinker from tab files

Java 1 7 Updated Jul 14, 2022

Tutorials for Junior Analysts

Java 1 Updated Oct 19, 2023